NIFTY - Nice Interface For Testing Your Data

Select the search form below to enter your data. Click on the question mark for help with any selection, or read the main help file.


Searching for Marker Information


Search GDB for complete marker information
Marker Name:


For additional names your marker may go by:

Marker Name: ?


For YACs your marker is positive for,
primer sequences, number of alleles, and heterozygosity

Marker Name: ?


For Stanford G3 Radiation Hybrid Mapping location

Marker Name:


To access complete sequence data for your marker (or gene)

Name of gene or marker:
You can make your search more specific by specifying (or eliminating) the source organism of interest.
and or but not ?


Select Database:
GenBank Updates - recent additions to the database only
GenBank - full database
Both



For complete sequence, GDB information, PCR primers, genetic mapping,
YAC hits, contig info, radiation hybrid data, and more...

Marker Name: ?


Get vast amounts of info on genes - including nearby markers (if it's mapped).

Gene Name/Symbol:


Searching for YAC Information


Yac name: ?


Multiple YACs - Separate YAC names by spaces.
?


Chromosome Browsing


Select Chromosome:
Map of contigs anchored to integrated (RH + genetic) map
Map of contigs anchored to radiation hybrid map
Complete radiation hybrid map
Map of contigs anchored to genetic map
List of all STSs assigned to chromosome

?


Search for genes and markers in your specific area

Chromosomal Location: ?


Select Database:
GenBank Updates - recent additions to the database only
GenBank - full database
Both


Entrez Search of Medline:

Search Field: Search Mode:

Enter Term : Clear All


Gapped BLAST search (v2.0):

Choose program to use and database to search:

     Program Database
                 Perform ungapped alignment


Enter here your input data as

Please read about FASTA format description

View results in a separate window.
Click here to retrieve results if you already have a request ID.

Advanced options for the BLAST server:


      Choose an organism from the list to limit your BLAST search:

Expect   Filter Low complexity Human repeats Mask for lookup table only
Query Genetic Codes (blastx only)

These items are needed only for formatting. If you wish to change them, you may do so now or when you request your results.
        NCBI-gi         Graphical Overview
  Alignment view Descriptions   Alignments


These links are probably no good anymore.  If you ever use any of them, please email me and let me know.  Otherwise, I think I might just delete this section of the page.  If there are any you would like to see here, let me know that as well.

And I'm getting about 240 hits a week on this page, so I guess it's more than just the folks at NIH.  That's pretty neat.  I miss you guys!  Email me now and then! 

If you have any suggestions on making this page better, please send email to warren@esquilax.com

HTML by Warren

Warren S. Apel


Esquilax Productions